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applications/engineering
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BEDTools -
A flexible suite of utilities for comparing genomic features
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ColPack -
Algorithms for specialized vertex coloring problems
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GMT -
Generic Mapping Tools
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GMT-coastlines -
Coastline data for GMT
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Macaulay2 -
System for algebraic geometry and commutative algebra
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PyQuante -
Python Quantum Chemistry
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R -
A language for data analysis and graphics
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R-DBI -
Database interface module for R
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R-RM2 -
Revenue Management and Pricing for R
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R-RScaLAPACK -
An interface to perform parallel computation on linear algebra problems using ScaLAPACK
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R-hdf5 -
Interface to the NCSA HDF5 library
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R-msm -
Multi-state Markov and hidden Markov models in continuous time
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R-mvtnorm -
Multivariate normal and T distribution R Package
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R-qtl -
Tools for analyzing QTL experiments
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alliance -
VLSI EDA System
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apbs -
Adaptive Poisson Boltzmann Solver
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archimedes -
2D Quantum Monte Carlo simulator for semiconductor devices
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avarice -
Program for interfacing the Atmel JTAG ICE to GDB
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bfast -
Blat-like Fast Accurate Search Tool
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bowtie -
An ultrafast, memory-efficient short read aligner
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bwa -
Burrows-Wheeler Alignment tool
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cddlib -
A library for generating all vertices in convex polyhedrons
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chntpw -
Change passwords in Windows SAM files
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clac -
Command Line Advanced Calculator
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dgc -
Digital Gate Compiler
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dia-CMOS -
Dia CMOS Shapes
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dia-Digital -
Dia Digital IC logic shapes
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dia-electric2 -
Dia Digital IC logic shapes
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dia-electronic -
Dia Digital IC logic shapes
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dinotrace -
Waveform viewer for electronics
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drgeo -
Interactive educational geometry software
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drgeo-doc -
Html documentation for drgeo
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dx -
Open source version of IBM's Visualization Data Explorer
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electric -
Sophisticated Java based VLSI CAD System
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emacs-verilog-mode -
Verilog mode for Emacs
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ergo -
A program for large-scale self-consistent field calculations
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espresso-ab -
A boolean minimization tool
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freehdl -
GPLed free VHDL
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gabedit -
GUI for computational chemistry
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gdl -
GNU Data Language
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geda-gaf -
Design Automation toolkit for electronic design
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geomview -
Interactive 3D viewing program
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geos -
GEOS is a C++ port of the Java Topology Suite
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gerbv -
Gerber file viewer from the gEDA toolkit
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gnucap -
The Gnu Circuit Analysis Package
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gplcver -
An interpreted Verilog HDL simulator
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grace -
Numerical Data Processing and Visualization Tool
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gromacs -
Fast, Free and Flexible Molecular Dynamics
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gtkwave -
Waveform Viewer
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iec16022 -
Generate ISO/IEC 16022 2D barcodes
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irsim -
Switch-level simulator used even for VLSI
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iverilog -
Icarus Verilog is a verilog compiler and simulator
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jmol -
An open-source Java viewer for chemical structures in 3D
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kst -
A data viewing program for KDE
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lcm -
Utilities for lightweight communications and marshaling
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libxc -
Library of exchange and correlation functionals to be used in DFT codes
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linsmith -
A Smith charting program
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magic -
A very capable VLSI layout tool
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maloc -
Minimal Abstraction Layer for Object-oriented C
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maxima -
Symbolic Computation Program
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messiggy -
Messiggy is a database of celestial objects
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mmseq -
Haplotype and isoform specific expression estimation for RNA-seq
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ncl -
NCAR Command Language and NCAR Graphics
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nco -
Suite of programs for manipulating NetCDF/HDF4 files
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netcdf -
Libraries for the Unidata network Common Data Form (NetCDF v3)
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netcdf-decoders -
Converts WMO GRIB products into NetCDF files
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netgen -
LVS netlist comparison tool for VLSI
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ngspice -
A mixed level/signal circuit simulator
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normaliz -
A tool for mathematical computations
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octave -
A high-level language for numerical computations
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ogdi -
Open Geographic Datastore Interface
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openscada -
Open SCADA system project
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pcb -
An interactive printed circuit board editor
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perl-Verilog-Perl -
Verilog parsing routines
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plplot -
Library of functions for making scientific plots
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proj -
Cartographic projection software (PROJ.4)
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pymol -
PyMOL Molecular Graphics System
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qucs -
Circuit simulator
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root -
Numerical data analysis framework
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roundup -
Simple and flexible issue-tracking system
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samtools -
Tools for nucleotide sequence alignments in the SAM format
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sextractor -
Extract catalogs of sources from astronomical images
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tachyon -
Parallel / Multiprocessor Ray Tracing System
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teal -
Verification Utility and Connection Library
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tkgate -
An event driven digital circuit simulator
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toped -
VLSI IC Layout Editor
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vcftools -
VCF file manipulation tools
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vhd2vl -
VHDL to Verilog translator
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wannier90 -
Maximally-localised Wannier functions
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wcstools -
Software utilities to display and manipulate the WCS of a FITS image
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wgrib -
Manipulate, inventory and decode GRIB files
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wgrib2 -
Manipulate, inventory and decode GRIB2 files
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wxMaxima -
Graphical user interface for Maxima
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xcircuit -
Electronic circuit schematic drawing program
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xpa -
The XPA messaging system
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xvarstar -
XVarStar is an astronomical program used for searching GCVS